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  5. lcl|BLLF01002141.1_cds_GFH22869.1_17346

lcl|BLLF01002141.1_cds_GFH22869.1_17346 (HaLaN_20391, GFH22869)


Aliases : HaLaN_20391, GFH22869

Description : C2H2-type domain-containing protein


Gene families : OG_01_0001226 (OrthoFinder) Phylogenetic Tree(s): OG0001226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002141.1_cds_GFH22869.1_17346
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
PTI_03G01830.1 No alias AAA domain; DNA2/NAM7 helicase-like, AAA domain [Interproscan]. 0.01 OrthoFinder
Sro1409_g270220.1 Contig1095.g10603 Putative helicase MOV-10 0.02 OrthoFinder
Sro1904_g304590.1 Contig2590.g21030 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 12 82
IPR041679 DNA2/NAM7-like_C 93 278
No external refs found!