1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021501.9

Cpa|evm.model.tig00021501.9 (tig00021501_g21949.t1)


Aliases : tig00021501_g21949.t1

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor


Gene families : OG_01_0002304 (OrthoFinder) Phylogenetic Tree(s): OG0002304_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021501.9
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
PTI_08G02450.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
Sro757_g197940.1 Contig322.g4283 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 0.02 OrthoFinder
TP11G01810.1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
Vocar.0021s0130.1 32895939 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
XM_002504492.1 MICPUN_104934, 104934 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61597.1_385 PRW61597 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform A 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61598.1_386 PRW61598 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform B 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500058.1_9011 KAA8500058 Putative DNA helicase INO80 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492875.1_2611 KAA8492875 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR020838 DBINO 550 661
IPR001650 Helicase_C 1516 1627
IPR000330 SNF2_N 839 1125
No external refs found!