lcl|BLLF01001984.1_cds_GFH22174.1_16651 (HaLaN_19595, GFH22174)

Aliases : HaLaN_19595, GFH22174

Description : U3 small nucleolar RNA-associated protein 11

Gene families : OG_01_0003512 (OrthoFinder) Phylogenetic Tree(s): OG0003512_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|BLLF01001984.1_cds_GFH22174.1_16651
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Cre13.g573050	30784706	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder
EOD37840	No alias	Small-subunit processome, Utp11 [Interproscan].	0.02	OrthoFinder
Sro49_g028910.1	Contig2054.g17641	Probable U3 small nucleolar RNA-associated protein 11	0.01	OrthoFinder
TP20G00740.1	No alias	Small-subunit processome, Utp11 [Interproscan].	0.02	OrthoFinder
Transcript_contig_58267	58267	Small-subunit processome, Utp11 [Interproscan].	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Enrichment
BP	GO:0007034	vacuolar transport	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
BP	GO:0009057	macromolecule catabolic process	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Enrichment
CC	GO:0030688	preribosome, small subunit precursor	IEP	Enrichment
CC	GO:0030880	RNA polymerase complex	IEP	Enrichment
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Enrichment
BP	GO:0044248	cellular catabolic process	IEP	Enrichment
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
CC	GO:1990234	transferase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007144	SSU_processome_Utp11	10	111

External Links

No external refs found!