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  5. Cpa|evm.model.tig00021501.12

Cpa|evm.model.tig00021501.12 (tig00021501_g21952.t1)


Aliases : tig00021501_g21952.t1

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component


Gene families : OG_01_0002237 (OrthoFinder) Phylogenetic Tree(s): OG0002237_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021501.12
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre06.g307450 30779768, SPL1 RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder
Cz14g19320.t1 No alias SWAP/Surp; Splicing factor 3A subunit 1 [Interproscan]. 0.02 OrthoFinder
Vocar.0030s0053.1 32894428 Splicing factor 3A subunit 1; SWAP/Surp [Interproscan]. 0.02 OrthoFinder
XM_002506683.1 MICPUN_104601, 104601 Splicing factor 3A subunit 1; SWAP/Surp; Ubiquitin-like... 0.02 OrthoFinder
lcl|BLLF01000881.1_cds_GFH15663.1_10140 HaLaN_11931, GFH15663 Ubiquitin-like domain-containing protein 0.01 OrthoFinder
lcl|BLLF01000881.1_cds_GFH15664.1_10141 HaLaN_11932, GFH15664 SWAP/Surp [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57503.1_8961 PRW57503 Putative splicing factor 3A subunit 1 isoform A 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 580 642
IPR022030 SF3A1_dom 215 408
IPR000061 Surp 147 197
IPR000061 Surp 30 81
No external refs found!