- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : tig00021493_g21848.t1
Description : Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica
Gene families : OG_01_0001896 (OrthoFinder) Phylogenetic Tree(s): OG0001896_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00021493.5 | |
| Cluster | HCCA: Cluster_166 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre02.g073650 | 30785080, PRP19 | RNA processing.RNA splicing.spliceosome-associated... | 0.03 | OrthoFinder | |
| Cz07g27120.t1 | No alias | WD40 repeat; Pre-mRNA-splicing factor 19 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD04798 | No alias | Pre-mRNA-splicing factor 19 [Interproscan]. | 0.01 | OrthoFinder | |
| PTI_00G01050.1 | No alias | Pre-mRNA-splicing factor 19; WD40 repeat [Interproscan]. | 0.03 | OrthoFinder | |
| Sro627_g177960.1 | Contig3366.g26383 | mRNA-processing factor 19 | 0.02 | OrthoFinder | |
| Vocar.0056s0028.1 | 32896680 | WD40 repeat; Pre-mRNA-splicing factor 19 [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002500469.1 | MICPUN_56935, 56935 | U box domain; WD40 repeat; Pre-mRNA-splicing factor 19... | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint signaling | IEP | Enrichment |
| BP | GO:0000077 | DNA damage checkpoint signaling | IEP | Enrichment |
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Enrichment |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003682 | chromatin binding | IEP | Enrichment |
| MF | GO:0004019 | adenylosuccinate synthase activity | IEP | Enrichment |
| MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Enrichment |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006325 | chromatin organization | IEP | Enrichment |
| BP | GO:0006338 | chromatin remodeling | IEP | Enrichment |
| BP | GO:0006353 | DNA-templated transcription, termination | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| BP | GO:0006534 | cysteine metabolic process | IEP | Enrichment |
| BP | GO:0006553 | lysine metabolic process | IEP | Enrichment |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | Enrichment |
| BP | GO:0007155 | cell adhesion | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Enrichment |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Enrichment |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Enrichment |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Enrichment |
| BP | GO:0009085 | lysine biosynthetic process | IEP | Enrichment |
| BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Enrichment |
| BP | GO:0009092 | homoserine metabolic process | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Enrichment |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | Enrichment |
| MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Enrichment |
| MF | GO:0016836 | hydro-lyase activity | IEP | Enrichment |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Enrichment |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019346 | transsulfuration | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
| CC | GO:0019866 | organelle inner membrane | IEP | Enrichment |
| MF | GO:0019899 | enzyme binding | IEP | Enrichment |
| MF | GO:0019902 | phosphatase binding | IEP | Enrichment |
| MF | GO:0019903 | protein phosphatase binding | IEP | Enrichment |
| BP | GO:0022610 | biological adhesion | IEP | Enrichment |
| CC | GO:0030117 | membrane coat | IEP | Enrichment |
| CC | GO:0030120 | vesicle coat | IEP | Enrichment |
| CC | GO:0030127 | COPII vesicle coat | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| MF | GO:0031491 | nucleosome binding | IEP | Enrichment |
| BP | GO:0031570 | DNA integrity checkpoint signaling | IEP | Enrichment |
| CC | GO:0031966 | mitochondrial membrane | IEP | Enrichment |
| BP | GO:0036211 | protein modification process | IEP | Enrichment |
| BP | GO:0042770 | signal transduction in response to DNA damage | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| MF | GO:0044877 | protein-containing complex binding | IEP | Enrichment |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Enrichment |
| BP | GO:0046451 | diaminopimelate metabolic process | IEP | Enrichment |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Enrichment |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Enrichment |
| BP | GO:0050667 | homocysteine metabolic process | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0051726 | regulation of cell cycle | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Enrichment |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Enrichment |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |