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  5. lcl|BLLF01001834.1_cds_GFH21465.1_15942

lcl|BLLF01001834.1_cds_GFH21465.1_15942 (HaLaN_18775, GFH21465)


Aliases : HaLaN_18775, GFH21465

Description : LETM1-like; Helicase, C-terminal; WW domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000110 (OrthoFinder) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001834.1_cds_GFH21465.1_15942
Cluster HCCA: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
Cre12.g540200 30792196 DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.02 OrthoFinder
Dusal.0313s00016.1 33202806 Helicase, C-terminal; WW domain; DEAD/DEAH box helicase... 0.05 OrthoFinder
OT_12G00350.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain; WW... 0.02 OrthoFinder
PTI_00G03690.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
PTI_04G04860.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Sro1046_g235060.1 Contig1884.g16427 Dependent RNA helicase 0.02 OrthoFinder
Sro3572_g349270.1 Contig4413.g33150 RNA helicase DBP2 0.02 OrthoFinder
SymbC1.scaffold406.3 406.3 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
SymbC1.scaffold4512.1 4512.1 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.01 OrthoFinder
TP03G06040.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Transcript_contig_56606 56606 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Transcript_contig_56629 56629 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
XM_003063159.1 MicpuC2_45923, 45923 Dead-box ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59081.1_7009 PRW59081 DEAD-box ATP-dependent RNA helicase 20-like 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59097.1_7373 PRW59097 DEAD-box ATP-dependent RNA helicase 24 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001202 WW_dom 12 42
IPR001650 Helicase_C 190 298
IPR011545 DEAD/DEAH_box_helicase_dom 98 150
IPR011685 LETM1 587 700
No external refs found!