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  5. lcl|BLLF01001714.1_cds_GFH20870.1_15347

lcl|BLLF01001714.1_cds_GFH20870.1_15347 (HaLaN_18069, GFH20870)


Aliases : HaLaN_18069, GFH20870

Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001714.1_cds_GFH20870.1_15347
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Cre12.g508150 30793288 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cz04g03240.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Cz04g34020.t1 No alias Helicase, C-terminal; Chromo domain; SNF2-related,... 0.02 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD05386 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
Sro264_g102660.1 Contig921.g9692 Probable chromatin-remodeling complex ATPase chain 0.01 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.01 OrthoFinder
Sro358_g125960.1 Contig1210.g11383 Probable chromatin-remodeling complex ATPase chain 0.01 OrthoFinder
Sro847_g210300.1 Contig4605.g34375 CHD3-type chromatin-remodeling factor 0.01 OrthoFinder
Vocar.0021s0108.1 32895927 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.02 OrthoFinder
XM_003061151.1 MicpuC2_60694, 60694 SNF2 super family 0.03 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20842.1_5116 PRW20842 ATP-dependent DNA helicase DDM1 isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
BP GO:0034453 microtubule anchoring IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 531 662
IPR000330 SNF2_N 249 400
IPR000330 SNF2_N 414 509
No external refs found!