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  5. lcl|BLLF01001696.1_cds_GFH20785.1_15262

lcl|BLLF01001696.1_cds_GFH20785.1_15262 (HaLaN_17963, GFH20785)


Aliases : HaLaN_17963, GFH20785

Description : Ribulose bisphosphate carboxylase small chain


Gene families : OG_01_0001359 (OrthoFinder) Phylogenetic Tree(s): OG0001359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001696.1_cds_GFH20785.1_15262
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre02.g120100 30785539, RBCS1 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder
Cre02.g120150 30786468, RBCS2 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder
Cz17g13100.t1 No alias Ribulose bisphosphate carboxylase small chain, domain... 0.03 OrthoFinder
Dusal.1014s00004.1 33200029 Ribulose bisphosphate carboxylase small chain, domain... 0.03 OrthoFinder
Vocar.0033s0065.1 32886362 Ribulose bisphosphate carboxylase small chain, domain... 0.06 OrthoFinder
Vocar.0033s0067.1 32886514 Ribulose bisphosphate carboxylase small chain, domain... 0.04 OrthoFinder
Vocar.0033s0068.1 32886323 Ribulose bisphosphate carboxylase small chain, domain... 0.05 OrthoFinder
Vocar.0033s0069.1 32886463 Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
Vocar.0033s0072.1 32886356 Ribulose bisphosphate carboxylase small chain, domain... 0.1 OrthoFinder
XM_002500716.1 MICPUN_104787, 104787 Ribulose bisphosphate carboxylase small chain 1,... 0.02 OrthoFinder
XM_003064579.1 MicpuC2_66674, 66674 Ribulose bisphosphate carboxylase small chain, domain... 0.06 OrthoFinder
lcl|BLLF01000015.1_cds_GFH05957.1_434 HaLaN_00508, GFH05957 Ribulose bisphosphate carboxylase small chain 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60509.1_4708 PRW60509 Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60779.1_4709 PRW60779 Ribulose bisphosphate small subunit precursor 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 1 47
No external refs found!