lcl|BLLF01001654.1_cds_GFH20541.1_15018 (HaLaN_17680, GFH20541)

Aliases : HaLaN_17680, GFH20541

Description : Coatomer subunit alpha

Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|BLLF01001654.1_cds_GFH20541.1_15018
Cluster	HCCA: Cluster_274

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000144.152	tig00000144_g9146.t1	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder
Cre13.g565850	30784724, COPA1	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder
Cz02g40250.t1	No alias	Coatomer, WD associated region; WD40 repeat [Interproscan].	0.02	OrthoFinder
EOD07013	No alias	COPA1, alpha subunit of the coatomer [Ensembl].	0.03	OrthoFinder
EOD15797	No alias	COPA1, alpha subunit of the coatomer [Ensembl].	0.02	OrthoFinder
TP06G03960.1	No alias	Coatomer, alpha subunit, C-terminal; Coatomer, WD...	0.02	OrthoFinder
Transcript_contig_78115	78115	Coatomer, alpha subunit, C-terminal [Interproscan].	0.01	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58160.1_7595	PRW58160	Coatomer subunit alpha-1	0.02	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491996.1_5004	KAA8491996	Coatomer subunit alpha	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
BP	GO:0006811	ion transport	IEP	Enrichment
BP	GO:0006817	phosphate ion transport	IEP	Enrichment
BP	GO:0006820	anion transport	IEP	Enrichment
BP	GO:0015698	inorganic anion transport	IEP	Enrichment
CC	GO:0016459	myosin complex	IEP	Enrichment
MF	GO:0019239	deaminase activity	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
BP	GO:0034220	ion transmembrane transport	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0098655	cation transmembrane transport	IEP	Enrichment
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Enrichment
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Enrichment
BP	GO:1902600	proton transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006692	Coatomer_WD-assoc_reg	158	321
IPR001680	WD40_repeat	15	48
IPR001680	WD40_repeat	58	93

External Links

No external refs found!