1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021463.4

Cpa|evm.model.tig00021463.4 (tig00021463_g21613.t1)


Aliases : tig00021463_g21613.t1

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-B component


Gene families : OG_01_0002828 (OrthoFinder) Phylogenetic Tree(s): OG0002828_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021463.4
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Cre14.g611150 30776765 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder
SymbC1.scaffold245.21 245.21 Hypothetical protein 0.01 OrthoFinder
Transcript_contig_78261 78261 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496831.1_560 KAA8496831 Small nuclear ribonucleoprotein-associated protein B 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 84
No external refs found!