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  5. lcl|BLLF01001465.1_cds_GFH19448.1_13925

lcl|BLLF01001465.1_cds_GFH19448.1_13925 (HaLaN_16394, GFH19448)


Aliases : HaLaN_16394, GFH19448

Description : Ribosomal protein L6, alpha-beta domain [Interproscan].


Gene families : OG_01_0002270 (OrthoFinder) Phylogenetic Tree(s): OG0002270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001465.1_cds_GFH19448.1_13925
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cre09.g415950 30781212, PRPL6 Protein biosynthesis.organelle translation... 0.13 OrthoFinder
Cz10g03060.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.07 OrthoFinder
Dusal.0148s00001.1 33200410 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
OT_15G02320.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
Sro51_chlor_g029620.1 Rpl6 Rpl6 0.04 OrthoFinder
Sro884_mit_g215700.1 Rpl6 Rpl6 0.04 OrthoFinder
TPCG02600.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.04 OrthoFinder
Vocar.0011s0204.1 32895344 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.09 OrthoFinder
XM_002505251.1 MICPUN_92039, 92039 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.07 OrthoFinder
XM_003060275.1 MicpuC2_45705, 45705 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34061.1_2806 PRW34061 50S ribosomal chloroplastic 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 123 197
IPR020040 Ribosomal_L6_a/b-dom 44 115
No external refs found!