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  5. lcl|BLLF01001412.1_cds_GFH19137.1_13614

lcl|BLLF01001412.1_cds_GFH19137.1_13614 (HaLaN_16038, GFH19137)


Aliases : HaLaN_16038, GFH19137

Description : 60S ribosomal protein L13


Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001412.1_cds_GFH19137.1_13614
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020629.36 tig00020629_g12358.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder
Cre14.g630100 30776357, RPL13 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cz15g22130.t1 No alias Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan]. 0.09 OrthoFinder
Dusal.0041s00032.1 33194551 Ribosomal protein L13e [Interproscan]. 0.05 OrthoFinder
EOD29349 No alias 60S ribosomal protein L13 [Ensembl]. 0.09 OrthoFinder
OT_05G05020.1 No alias Ribosomal protein L13e [Interproscan]. 0.07 OrthoFinder
PTI_20G02450.1 No alias Ribosomal protein L13e [Interproscan]. 0.13 OrthoFinder
Sro307_g113390.1 Contig2839.g22809 60S ribosomal protein L13-1 0.12 OrthoFinder
SymbC1.scaffold5728.4 5728.4 Ribosomal protein L13e [Interproscan]. 0.04 OrthoFinder
TP04G08470.1 No alias Ribosomal protein L13e [Interproscan]. 0.12 OrthoFinder
Vocar.0006s0140.1 32894315 Ribosomal protein L13e [Interproscan]. 0.06 OrthoFinder
XM_002502479.1 MICPUN_90780, 90780 Ribosomal protein L13e [Interproscan]. 0.13 OrthoFinder
XM_003056868.1 MicpuC2_62462, 62462 Ribosomal protein L13e [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61522.1_672 PRW61522 60S ribosomal L13-2 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491921.1_4929 KAA8491921 60S ribosomal protein L13-1 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 8 85
No external refs found!