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  5. lcl|BLLF01001377.1_cds_GFH18904.1_13381

lcl|BLLF01001377.1_cds_GFH18904.1_13381 (HaLaN_15778, GFH18904)


Aliases : HaLaN_15778, GFH18904

Description : 26S proteasome regulatory subunit


Gene families : OG_01_0001839 (OrthoFinder) Phylogenetic Tree(s): OG0001839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001377.1_cds_GFH18904.1_13381
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cre17.g710150 30782016, RPT4 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder
EOD05789 No alias Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.04 OrthoFinder
OT_03G03400.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.03 OrthoFinder
PTI_06G01270.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.03 OrthoFinder
Sro545_g163780.1 Contig1180.g11221 S10B homolog B 0.04 OrthoFinder
TP12G00010.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.02 OrthoFinder
Vocar.0021s0037.1 32896036 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59372.1_7107 PRW59372 26S proteasome regulatory ATPase RPT4 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 49 99
No external refs found!