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  5. lcl|BLLF01001343.1_cds_GFH18714.1_13191

lcl|BLLF01001343.1_cds_GFH18714.1_13191 (HaLaN_15562, GFH18714)


Aliases : HaLaN_15562, GFH18714

Description : Expressed protein


Gene families : OG_01_0003983 (OrthoFinder) Phylogenetic Tree(s): OG0003983_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001343.1_cds_GFH18714.1_13191
Cluster HCCA: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.9 tig00021108_g18299.t1 No description available 0.07 OrthoFinder
Cre01.g012350 30788907 No description available 0.11 OrthoFinder
Cz09g27060.t1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
EOD16648 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.05 OrthoFinder
OT_04G04090.1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
Transcript_contig_78668 78668 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.02 OrthoFinder
Transcript_contig_78913 78913 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.04 OrthoFinder
Transcript_contig_89760 89760 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.05 OrthoFinder
XM_002506074.1 MICPUN_104038, 104038 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
XM_003056723.1 MicpuC2_56167, 56167 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61325.1_498 PRW61325 DNA polymerase V 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007015 DNA_pol_V/MYBBP1A 337 533
IPR007015 DNA_pol_V/MYBBP1A 1 139
No external refs found!