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  5. lcl|BLLF01001303.1_cds_GFH18455.1_12932

lcl|BLLF01001303.1_cds_GFH18455.1_12932 (HaLaN_15267, GFH18455)


Aliases : HaLaN_15267, GFH18455

Description : Reverse transcriptase Ty1/copia-type domain-containing protein


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001303.1_cds_GFH18455.1_12932
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz02g10210.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.02 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.02 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.02 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.02 OrthoFinder
OT_08G00390.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01004109.1_cds_GFH28937.1_23414 HaLaN_27507, GFH28937 Hypothetical protein 0.05 OrthoFinder
lcl|BLLF01005460.1_cds_GFH31224.1_25701 HaLaN_30220, GFH31224 Reverse transcriptase Ty1/copia-type domain-containing protein 0.03 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment

No InterPro domains available for this sequence

No external refs found!