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  5. lcl|BLLF01001239.1_cds_GFH18032.1_12509

lcl|BLLF01001239.1_cds_GFH18032.1_12509 (HaLaN_14767, GFH18032)


Aliases : HaLaN_14767, GFH18032

Description : CSD-domain-containing protein


Gene families : OG_01_0000183 (OrthoFinder) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001239.1_cds_GFH18032.1_12509
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre06.g268600 30779749, NAB1 External stimuli response.temperature.Csd... 0.09 OrthoFinder
Cz05g02010.t1 No alias Cold-shock protein, DNA-binding; RNA recognition motif... 0.08 OrthoFinder
OT_06G03080.1 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1576.4 1576.4 Cold-shock protein, DNA-binding; RNA recognition motif... 0.02 OrthoFinder
Transcript_contig_79230 79230 Cold-shock protein, DNA-binding [Interproscan]. 0.04 OrthoFinder
Vocar.0002s0155.1 32890859 Cold-shock protein, DNA-binding; RNA recognition motif... 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57393.1_9401 PRW57393 Phosphatidylinositol:ceramide inositolphosphotransferase... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 22 70
IPR000504 RRM_dom 119 175
No external refs found!