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  5. Cpa|evm.model.tig00021433.38

Cpa|evm.model.tig00021433.38 (tig00021433_g21290.t1)


Aliases : tig00021433_g21290.t1

Description : 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0003378 (OrthoFinder) Phylogenetic Tree(s): OG0003378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021433.38
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre06.g308250 30778562, RPS4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz06g06080.t1 No alias 40S ribosomal protein S4, C-terminal domain; RNA-binding... 0.12 OrthoFinder
Dusal.0453s00001.1 33187619 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
Dusal.0521s00005.1 33197389 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.07 OrthoFinder
EOD21843 No alias 40S ribosomal protein S4 [Ensembl]. 0.15 OrthoFinder
OT_17G01340.1 No alias 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.31 OrthoFinder
PTI_01G02680.1 No alias Ribosomal protein S4e, N-terminal; KOW; 40S ribosomal... 0.29 OrthoFinder
Sro611_g175310.1 Contig1882.g16412 40S ribosomal protein S4 0.37 OrthoFinder
TP02G09320.1 No alias 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.3 OrthoFinder
Vocar.0009s0158.1 32893178 Ribosomal protein S4e, central region; RNA-binding S4... 0.12 OrthoFinder
XM_002502201.1 MICPUN_90851, 90851 KOW; 40S ribosomal protein S4, C-terminal domain;... 0.32 OrthoFinder
XM_003063958.1 MicpuC2_36856, 36856 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.12 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56747.1_9789 PRW56747 40S ribosomal X isoform 0.14 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492541.1_9234 KAA8492541 40S ribosomal protein S4 0.2 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 90 141
IPR005824 KOW 151 183
IPR013843 Ribosomal_S4e_N 3 39
IPR032277 40S_S4_C 184 230
IPR002942 S4_RNA-bd 47 89
No external refs found!