lcl|BLLF01000966.1_cds_GFH16238.1_10715 (HaLaN_12620, GFH16238)

Aliases : HaLaN_12620, GFH16238

Description : TRUD domain-containing protein

Gene families : OG_01_0001257 (OrthoFinder) Phylogenetic Tree(s): OG0001257_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: lcl|BLLF01000966.1_cds_GFH16238.1_10715
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cre01.g007651 30789092 No description available 0.02 OrthoFinder
Cz10g14080.t1 No alias Hypothetical protein 0.05 OrthoFinder
Cz10g14090.t1 No alias Pseudouridine synthase, TruD [Interproscan]. 0.02 OrthoFinder
EOD17688 No alias Pseudouridine synthase, TruD [Interproscan]. 0.03 OrthoFinder
Transcript_contig_83412 83412 Hypothetical protein 0.02 OrthoFinder
Vocar.0024s0205.1 32890299 Pseudouridine synthase, TruD [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000024.1_cds_GFH06139.1_616 HaLaN_00718, GFH06139 TRUD domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR001656 PsdUridine_synth_TruD 37 234
No external refs found!