1. Home
  2. Species
  3. Haematococcus lacustris
  4. Sequence
  5. lcl|BLLF01000939.1_cds_GFH16061.1_10538

lcl|BLLF01000939.1_cds_GFH16061.1_10538 (HaLaN_12409, GFH16061)


Aliases : HaLaN_12409, GFH16061

Description : Proteasome subunit beta


Gene families : OG_01_0003142 (OrthoFinder) Phylogenetic Tree(s): OG0003142_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000939.1_cds_GFH16061.1_10538
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.80 tig00020554_g10859.t1 Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder
Cre14.g610950 30776567 Protein degradation.26S proteasome.20S core... 0.06 OrthoFinder
Cz06g24010.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.04 OrthoFinder
Dusal.0079s00002.1 33199425 Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
EOD37794 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.08 OrthoFinder
PTI_05G01540.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.06 OrthoFinder
Sro236_g094920.1 Contig1410.g12930 Probable proteasome subunit beta type-4 0.08 OrthoFinder
TP09G01320.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
Transcript_contig_55472 55472 Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
Vocar.0050s0047.1 32892328 Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
XM_002506282.1 MICPUN_109546, 109546 Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
XM_003063267.1 MicpuC2_44925, 44925 Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497141.1_870 KAA8497141 Proteasome subunit beta type-2-B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 5 181
No external refs found!