1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021428.5

Cpa|evm.model.tig00021428.5 (tig00021428_g21146.t1)


Aliases : tig00021428_g21146.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.WDR12 component


Gene families : OG_01_0003560 (OrthoFinder) Phylogenetic Tree(s): OG0003560_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021428.5
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre17.g710100 30782724 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cz05g29110.t1 No alias WD40 repeat; NLE [Interproscan]. 0.04 OrthoFinder
EOD41420 No alias WD40 repeat; NLE [Interproscan]. 0.05 OrthoFinder
PTI_02G04040.1 No alias WD40 repeat; NLE [Interproscan]. 0.04 OrthoFinder
Sro2353_g324440.1 Contig3833.g29477 Ribosome biogenesis protein WDR12 0.04 OrthoFinder
TP06G01220.1 No alias WD40 repeat; NLE [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33193.1_3572 PRW33193 Ribosome biogenesis WDR12-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 195 226
IPR001680 WD40_repeat 282 319
IPR001680 WD40_repeat 331 355
IPR012972 NLE 11 73
No external refs found!