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  5. lcl|BLLF01000750.1_cds_GFH14648.1_9125

lcl|BLLF01000750.1_cds_GFH14648.1_9125 (HaLaN_10746, GFH14648)


Aliases : HaLaN_10746, GFH14648

Description : RING-type domain-containing protein


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000750.1_cds_GFH14648.1_9125
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.22 tig00020943_g16264.t1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
EOD07947 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
EOD21978 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Sro40_g024590.1 Contig335.g4466 RING finger domain protein 0.01 OrthoFinder
TP03G04320.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496988.1_717 KAA8496988 E3 ubiquitin-protein ligase 0.01 OrthoFinder

  • GO
  • Predicted GO
  • Transcript_contig_78210 expression profile<a href="#tab3default" data-toggle="tab"> InterPro</a></li></ul></div><div><div class="tab-content"><div class="tab-pane fade in active" id="tab1default"><div class="table-responsive"><table class="table table-striped table-fixed" id="go_table"><thead><tr><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th><th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th></tr></thead><tbody><tr><td class="col-xs-12"><p>No GO annotation available for this sequence</p></td></tr></tbody></table></div><div class="panel-body"><a href="#" id="go_toggle">Toggle parental</a></div></div><div class="tab-pane fade" id="tab2default"><div class="table-responsive"><table class="table table-striped table-fixed" id="predicted_go_table"><thead><tr><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th><th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th></tr></thead><tbody><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/2867" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+)." [EC:2.7.1.23, RHEA:18629]">GO:0003951</a></td><td class="col-xs-6">NAD+ kinase activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/5230" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH." [GOC:mah]">GO:0006739</a></td><td class="col-xs-6">NADP metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/5232" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH." [GOC:mah]">GO:0006741</a></td><td class="col-xs-6">NADP biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/12122" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinamide." [GOC:go_curators]">GO:0019359</a></td><td class="col-xs-6">nicotinamide nucleotide biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/12125" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base." [GOC:jl]">GO:0019362</a></td><td class="col-xs-6">pyridine nucleotide metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/12126" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base." [GOC:jl, GOC:pde, GOC:vw]">GO:0019363</a></td><td class="col-xs-6">pyridine nucleotide biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/23977" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide." [ISBN:0198506732]">GO:0046496</a></td><td class="col-xs-6">nicotinamide nucleotide metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/24416" data-toggle="tooltip" data-placement="top" title=""The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits." [ISBN:0198506732]">GO:0046983</a></td><td class="col-xs-6">protein dimerization activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/33586" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof." [GOC:mah]">GO:0072524</a></td><td class="col-xs-6">pyridine-containing compound metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/33587" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof." [GOC:mah]">GO:0072525</a></td><td class="col-xs-6">pyridine-containing compound biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Enrichment</td></tr></tbody></table></div></div><div class="tab-pane fade" id="tab3default"><div class="panel-body"><p>No InterPro domains available for this sequence</p></div></div></div></div></div><div class="row"><div class="col-lg-12 col-md-12 col-sm-12"><div class="panel panel-default"><div class="panel-heading" id="links">External Links</div><div class="table-responsive"><table class="table table-striped table-separated"><tbody><tr><td><em>No external refs found!</em></td></td></tr></tbody></table></div></div></div></div><div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"><div class="modal-dialog" role="document" style="width:1000px;height:800px;"><div class="modal-content"></div></div></div></div></div></div><footer class="footer" id="footer"><div class="container"><div class="row"><div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">protists.guru</a></strong></div><div class="col-xs-2"><a href="/about" class="text-muted">About</a></div><div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div><div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div><div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div></div></div></footer><div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"><div class="modal-dialog" role="document" style="width:1000px;height:800px;"><div class="modal-content"></div></div></div><div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"><div class="modal-dialog" role="document" style="width:1000px;height:800px;"><div class="modal-content"><div class="modal-body"><div id="leafy_loader"></div><p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ...</p><p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style> Close</button></p></div></div></div></div><script src="/static/js/jquery.min.js"></script><script src="/static/js/bootstrap.min.js"></script><script src="/static/js/stupidtable.min.js"></script><script src="/static/js/TweenMax.min.js"></script><script src="/static/js/jquery.qtip.min.js"></script><script src="/static/js/planet_loader.js"></script><script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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