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  5. lcl|BLLF01000722.1_cds_GFH14405.1_8882

lcl|BLLF01000722.1_cds_GFH14405.1_8882 (HaLaN_10454, GFH14405)


Aliases : HaLaN_10454, GFH14405

Description : Component of cytosolic 80S ribosome and 40S small subunit


Gene families : OG_01_0002382 (OrthoFinder) Phylogenetic Tree(s): OG0002382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000722.1_cds_GFH14405.1_8882
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
OT_17G01420.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
PTI_17G01720.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.01 OrthoFinder
Sro693_g188270.1 Contig3212.g25392 40S ribosomal protein S2 (Fragment) 0.02 OrthoFinder
TP10G03790.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39136.1_2764 PRW39136 40S ribosomal S2-4 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497763.1_6716 KAA8497763 40S ribosomal protein S2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 37 101
IPR005324 Ribosomal_S5_C 120 191
No external refs found!