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  5. lcl|BLLF01000680.1_cds_GFH14040.1_8517

lcl|BLLF01000680.1_cds_GFH14040.1_8517 (HaLaN_10013, GFH14040)


Aliases : HaLaN_10013, GFH14040

Description : Nucleolar, Nop52 [Interproscan].


Gene families : OG_01_0003254 (OrthoFinder) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000680.1_cds_GFH14040.1_8517
Cluster HCCA: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
Cre01.g019200 30788766 No description available 0.04 OrthoFinder
EOD09537 No alias Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
OT_14G00850.1 No alias Nucleolar, Nop52 [Interproscan]. 0.04 OrthoFinder
PTI_04G01930.1 No alias Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
Sro550_g164740.1 Contig731.g8404 RNA processing protein 1 homolog B 0.02 OrthoFinder
TP02G06580.1 No alias Nucleolar, Nop52 [Interproscan]. 0.04 OrthoFinder
UNPLg00194.t1 No alias Nucleolar, Nop52 [Interproscan]. 0.03 OrthoFinder
XM_002505441.1 MICPUN_87731, 87731 Nucleolar, Nop52 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18349.1_5786 PRW18349 Ribosomal RNA processing 1-like protein 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496889.1_618 KAA8496889 Ribosomal RNA processing protein 1-like A 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0030688 preribosome, small subunit precursor IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010301 Nop52 27 181
No external refs found!