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  5. lcl|BLLF01000651.1_cds_GFH13784.1_8261

lcl|BLLF01000651.1_cds_GFH13784.1_8261 (HaLaN_09730, GFH13784)


Aliases : HaLaN_09730, GFH13784

Description : CCR4-NOT transcription complex subunit 1


Gene families : OG_01_0002549 (OrthoFinder) Phylogenetic Tree(s): OG0002549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000651.1_cds_GFH13784.1_8261
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000767.19 tig00000767_g3963.t1 RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder
Cz07g24160.t1 No alias CCR4-NOT transcription complex subunit 1, TTP binding... 0.03 OrthoFinder
Dusal.0547s00008.1 33188676 CCR4-NOT transcription complex subunit 1, HEAT repeat;... 0.02 OrthoFinder
EOD13355 No alias CCR4-NOT transcription complex subunit 1, HEAT repeat;... 0.02 OrthoFinder
EOD33366 No alias CCR4-Not complex component, Not1, C-terminal [Interproscan]. 0.01 OrthoFinder
Transcript_contig_54481 54481 CCR4-NOT transcription complex subunit 1, TTP binding... 0.02 OrthoFinder
Vocar.0022s0070.1 32891945 CCR4-NOT transcription complex subunit 1, TTP binding... 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR024557 CCR4-Not_Not1su_DUF3819 2 93
No external refs found!