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  5. lcl|BLLF01000651.1_cds_GFH13783.1_8260

lcl|BLLF01000651.1_cds_GFH13783.1_8260 (HaLaN_09729, GFH13783)


Aliases : HaLaN_09729, GFH13783

Description : CCR4-NOT transcription complex subunit 1, CAF1-binding domain; CCR4-NOT transcription complex subunit 1, TTP binding domain [Interproscan].


Gene families : OG_01_0002549 (OrthoFinder) Phylogenetic Tree(s): OG0002549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000651.1_cds_GFH13783.1_8260
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000767.19 tig00000767_g3963.t1 RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder
Cz07g24160.t1 No alias CCR4-NOT transcription complex subunit 1, TTP binding... 0.03 OrthoFinder
EOD13355 No alias CCR4-NOT transcription complex subunit 1, HEAT repeat;... 0.02 OrthoFinder
Transcript_contig_54481 54481 CCR4-NOT transcription complex subunit 1, TTP binding... 0.01 OrthoFinder
Vocar.0022s0070.1 32891945 CCR4-NOT transcription complex subunit 1, TTP binding... 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494454.1_2984 KAA8494454 CCR4-NOT transcription complex subunit 1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR032191 CNOT1_CAF1_bind 290 507
IPR032193 CNOT1_TTP_bind 4 165
No external refs found!