lcl|BLLF01000625.1_cds_GFH13551.1_8028 (HaLaN_09455, GFH13551)

Aliases : HaLaN_09455, GFH13551

Description : Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Adenylyl cyclase class-3/4/guanylyl cyclase; Histidine kinase/HSP90-like ATPase; Archaeal/bacterial/fungal rhodopsins; Sterile alpha motif domain [Interproscan].

Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: lcl|BLLF01000625.1_cds_GFH13551.1_8028
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.236 tig00000042_g15634.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Cpa|evm.model.tig00000093.235 tig00000093_g3661.t1 Histidine kinase 3 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000157.108 tig00000157_g9707.t1 Ethylene receptor 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000403.48 tig00000403_g305.t1 Ethylene response sensor 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000640.11 tig00000640_g2766.t1 Probable histidine kinase 4 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder
Cpa|evm.model.tig00020610.13 tig00020610_g11951.t1 Histidine kinase 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020965.42 tig00021501_g21945.t1 Histidine kinase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre11.g469400 30775874 No description available 0.01 OrthoFinder
Cre13.g571200 30784146 Probable histidine kinase 1 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Cre16.g678900 30778058 No description available 0.02 OrthoFinder
Cz12g05190.t1 No alias Archaeal/bacterial/fungal rhodopsins; Sterile alpha... 0.01 OrthoFinder
Dusal.0198s00010.1 33192678 Signal transduction response regulator, receiver domain;... 0.02 OrthoFinder
Dusal.0212s00008.1 33202594 Signal transduction response regulator, receiver domain;... 0.03 OrthoFinder
Sro1101_g241350.1 Contig3867.g29737 Transcriptional regulatory protein WalR 0.01 OrthoFinder
Sro346_g122750.1 Contig4731.g35102 Hybrid signal transduction histidine kinase J 0.01 OrthoFinder
XM_003062956.1 MicpuC2_21996, 21996 Signal transduction histidine kinase,... 0.02 OrthoFinder
lcl|BLLF01000788.1_cds_GFH14961.1_9438 HaLaN_11105, GFH14961 Signal transduction histidine kinase,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0005216 ion channel activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
BP GO:0009190 cyclic nucleotide biosynthetic process IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0035556 intracellular signal transduction IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR001660 SAM 1117 1173
IPR001425 Arc/bac/fun_rhodopsins 60 206
IPR003661 HisK_dim/P 242 306
IPR003594 HATPase_C 356 464
IPR001789 Sig_transdc_resp-reg_receiver 526 639
IPR001054 A/G_cyclase 703 868
No external refs found!