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  5. lcl|BLLF01000519.1_cds_GFH12596.1_7073

lcl|BLLF01000519.1_cds_GFH12596.1_7073 (HaLaN_08309, GFH12596)


Aliases : HaLaN_08309, GFH12596

Description : 40S ribosomal protein S15a


Gene families : OG_01_0003009 (OrthoFinder) Phylogenetic Tree(s): OG0003009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000519.1_cds_GFH12596.1_7073
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.110 tig00000158_g10212.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder
Cre05.g234637 30782975 Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder
Cz14g19140.t1 No alias Ribosomal protein S8 [Interproscan]. 0.08 OrthoFinder
Dusal.0068s00005.1 33187240 Ribosomal protein S8 [Interproscan]. 0.05 OrthoFinder
EOD16196 No alias Ribosomal protein S8 [Ensembl]. 0.03 OrthoFinder
EOD40032 No alias Ribosomal protein S8 [Ensembl]. 0.13 OrthoFinder
OT_01G02380.1 No alias Ribosomal protein S8 [Interproscan]. 0.08 OrthoFinder
PTI_26G00870.1 No alias Ribosomal protein S8 [Interproscan]. 0.14 OrthoFinder
Sro60_g034790.1 Contig797.g8956 40S ribosomal protein S15a 0.13 OrthoFinder
SymbC1.scaffold3882.8 3882.8 Ribosomal protein S8 [Interproscan]. 0.04 OrthoFinder
TP10G03670.1 No alias Ribosomal protein S8 [Interproscan]. 0.13 OrthoFinder
Transcript_contig_80036 80036 Ribosomal protein S8 [Interproscan]. 0.04 OrthoFinder
XM_002507541.1 MICPUN_107532, 107532 Ribosomal protein S8 [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58777.1_7006 PRW58777 40S ribosomal S15a-1 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495085.1_3615 KAA8495085 40S ribosomal protein S15a 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR000630 Ribosomal_S8 38 119
No external refs found!