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  5. lcl|BLLF01000499.1_cds_GFH12399.1_6876

lcl|BLLF01000499.1_cds_GFH12399.1_6876 (HaLaN_08078, GFH12399)


Aliases : HaLaN_08078, GFH12399

Description : 30S ribosomal protein 1


Gene families : OG_01_0002719 (OrthoFinder) Phylogenetic Tree(s): OG0002719_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000499.1_cds_GFH12399.1_6876
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
EOD20905 No alias Ribosome hibernation promoting factor/RaiA [Interproscan]. 0.01 OrthoFinder
EOD25345 No alias Ribosome hibernation promoting factor/RaiA [Interproscan]. 0.01 OrthoFinder
OT_14G01350.1 No alias Ribosome hibernation promoting factor/RaiA [Interproscan]. 0.01 OrthoFinder
PTI_30G00450.1 No alias Ribosome hibernation promoting factor/RaiA; Sigma 54... 0.02 OrthoFinder
Sro861_g212350.1 Contig902.g9529 Hibernation promotion factor 0.01 OrthoFinder
XM_002505777.1 MICPUN_109404, 109404 Ribosome hibernation promoting factor/RaiA; Sigma 54... 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496956.1_685 KAA8496956 Ribosome hibernation promotion factor 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0044238 primary metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004451 isocitrate lyase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
BP GO:0016559 peroxisome fission IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
BP GO:0048285 organelle fission IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003489 RHF/RaiA 52 149
No external refs found!