1. Home
  2. Species
  3. Haematococcus lacustris
  4. Sequence
  5. lcl|BLLF01000380.1_cds_GFH11172.1_5649

lcl|BLLF01000380.1_cds_GFH11172.1_5649 (HaLaN_06628, GFH11172)


Aliases : HaLaN_06628, GFH11172

Description : Ribosomal protein S13 [Interproscan].


Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000380.1_cds_GFH11172.1_5649
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Dusal.0003s00026.1 33187489 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
PTI_23G01020.1 No alias Ribosomal protein S13 [Interproscan]. 0.01 OrthoFinder
Sro2117_g315240.1 Contig3258.g25694 40S ribosomal protein S18 0.01 OrthoFinder
Vocar.0002s0337.1 32891179 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
XM_003063744.1 MicpuC2_49747, 49747 Ribosomal protein S18 (RPS18) 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495014.1_3544 KAA8495014 40S ribosomal protein S18 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 55 138
No external refs found!