lcl|BLLF01000280.1_cds_GFH10007.1_4484 (HaLaN_05249, GFH10007)


Aliases : HaLaN_05249, GFH10007

Description : Prolycopene isomerase, chloroplastic


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000280.1_cds_GFH10007.1_4484
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001095.9 tig00001095_g7025.t1 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00020723.8 tig00020723_g13427.t1 No description available 0.01 OrthoFinder
Cre09.g407200 30780595 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.05 OrthoFinder
Cre16.g651923 30776797 Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder
Cz14g22040.t1 No alias Amine oxidase [Interproscan]. 0.06 OrthoFinder
Dusal.0111s00019.1 33199801 Amine oxidase [Interproscan]. 0.02 OrthoFinder
PTI_06G02910.1 No alias Amine oxidase [Interproscan]. 0.01 OrthoFinder
Sro1228_g254380.1 Contig2695.g21739 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
Sro1559_g282470.1 Contig1268.g11842 Prolycopene isomerase 2, chloroplastic 0.02 OrthoFinder
Sro1649_g288630.1 Contig3529.g27273 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
Sro570_g168610.1 Contig131.g1484 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
TP03G05800.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
Transcript_contig_2488 2488 NAD(P)-binding Rossmann-like domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_78738 78738 Hypothetical protein 0.02 OrthoFinder
Vocar.0018s0001.1 32898723 Amine oxidase [Interproscan]. 0.01 OrthoFinder
Vocar.0032s0058.1 32893700 Amine oxidase [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment

No InterPro domains available for this sequence

No external refs found!