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  5. lcl|BLLF01000279.1_cds_GFH09985.1_4462

lcl|BLLF01000279.1_cds_GFH09985.1_4462 (HaLaN_05221, GFH09985)


Aliases : HaLaN_05221, GFH09985

Description : S4 RNA-binding domain-containing protein


Gene families : OG_01_0002993 (OrthoFinder) Phylogenetic Tree(s): OG0002993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000279.1_cds_GFH09985.1_4462
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Cre03.g170750 30786644, RNP3 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
Dusal.0135s00002.1 33194042 Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.03 OrthoFinder
OT_14G00670.1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.01 OrthoFinder
TP07G06000.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32864.1_3649 PRW32864 U3 small nucleolar ribonucleo IMP3 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 130 176
IPR001912 Ribosomal_S4/S9_N 27 86
No external refs found!