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  5. lcl|BLLF01000187.1_cds_GFH08821.1_3298

lcl|BLLF01000187.1_cds_GFH08821.1_3298 (HaLaN_03852, GFH08821)


Aliases : HaLaN_03852, GFH08821

Description : RRM domain-containing protein


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000187.1_cds_GFH08821.1_3298
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.146 tig00020553_g10637.t1 Serine/arginine-rich splicing factor SR45a... 0.01 OrthoFinder
Cre01.g024200 30788323 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.01 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0741s00004.1 33191036 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
PTI_08G03190.1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Sro1330_g263450.1 Contig4401.g33064 29 kDa ribonucleoprotein A, chloroplastic 0.01 OrthoFinder
Sro1655_g289020.1 Contig2908.g23148 Stimulation factor subunit 2 tau variant 0.01 OrthoFinder
Transcript_contig_57014 57014 RNA recognition motif domain; Cleavage stimulation... 0.01 OrthoFinder
Vocar.0007s0376.1 32887918 Cleavage stimulation factor subunit 2, hinge domain; RNA... 0.02 OrthoFinder
Vocar.0009s0275.1 32893396 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 108 175
No external refs found!