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  5. lcl|BLLF01000177.1_cds_GFH08688.1_3165

lcl|BLLF01000177.1_cds_GFH08688.1_3165 (HaLaN_03689, GFH08688)


Aliases : HaLaN_03689, GFH08688

Description : Chloroplast glycerolipid omega-3-fatty acid desaturase


Gene families : OG_01_0000422 (OrthoFinder) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000177.1_cds_GFH08688.1_3165
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Cre01.g038600 30789324, FAD7 Lipid metabolism.fatty acid synthesis.fatty acid... 0.03 OrthoFinder
Cz04g31180.t1 No alias Fatty acid desaturase domain; Fatty acid desaturase,... 0.06 OrthoFinder
EOD16139 No alias Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
EOD23700 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD28547 No alias Fatty acid desaturase domain [Interproscan]. 0.01 OrthoFinder
OT_17G02050.1 No alias Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
PTI_17G01900.1 No alias Fatty acid desaturase domain [Interproscan]. 0.01 OrthoFinder
Sro1616_g286240.1 Contig599.g7471 Delta(12) acyl-lipid conjugase (11E,13E-forming) 0.02 OrthoFinder
TP03G00790.1 No alias Fatty acid desaturase domain [Interproscan]. 0.04 OrthoFinder
TP08G03140.1 No alias Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55169 55169 Fatty acid desaturase domain; Fatty acid desaturase,... 0.01 OrthoFinder
Vocar.0001s0730.1 32886110 Fatty acid desaturase domain; Fatty acid desaturase,... 0.02 OrthoFinder
XM_002502271.1 MICPUN_108347, 108347 Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60085.1_6470 PRW60085 Omega-3 fatty acid desaturase 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495721.1_1719 KAA8495721 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA Interproscan
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006597 spermine biosynthetic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0008215 spermine metabolic process IEP Enrichment
BP GO:0008216 spermidine metabolic process IEP Enrichment
BP GO:0008295 spermidine biosynthetic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR021863 FAS_N 35 107
IPR005804 FA_desaturase_dom 114 351
No external refs found!