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  5. lcl|BLLF01000166.1_cds_GFH08523.1_3000

lcl|BLLF01000166.1_cds_GFH08523.1_3000 (HaLaN_03502, GFH08523)


Aliases : HaLaN_03502, GFH08523

Description : Ribulose-phosphate 3-epimerase


Gene families : OG_01_0000691 (OrthoFinder) Phylogenetic Tree(s): OG0000691_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000166.1_cds_GFH08523.1_3000
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020564.39 tig00020564_g11439.t1 Ribulose-phosphate 3-epimerase, chloroplastic... 0.03 OrthoFinder
Cre12.g511900 30792739, RPE1 Photosynthesis.calvin cycle.phosphopentose epimerase 0.04 OrthoFinder
EOD06320 No alias Ribulose-5-phosphate 3-epimerase [Ensembl]. 0.03 OrthoFinder
EOD07690 No alias Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.03 OrthoFinder
EOD23771 No alias Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.02 OrthoFinder
OT_06G01640.1 No alias Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.03 OrthoFinder
PTI_01G00840.1 No alias Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.03 OrthoFinder
Sro1081_g239100.1 Contig4556.g34028 Ribulose-phosphate 3-epimerase 0.05 OrthoFinder
TP03G08510.1 No alias Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.03 OrthoFinder
Transcript_contig_55201 55201 Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.03 OrthoFinder
Vocar.0016s0191.1 32897880 Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.03 OrthoFinder
XM_002500789.1 MICPUN_104768, 104768 Ribulose-phosphate 3-epimerase (RPE) 0.05 OrthoFinder
XM_003059373.1 MicpuC2_47473, 47473 Ribulose-phosphate 3-epimerase-like [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491266.1_5894 KAA8491266 Ribulose-phosphate 3-epimerase, chloroplastic 0.03 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490989.1_6192 KAA8490989 Ribulose-phosphate 3-epimerase, chloroplastic 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000056 Ribul_P_3_epim-like 43 207
IPR000056 Ribul_P_3_epim-like 224 261
No external refs found!