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  5. Cpa|evm.model.tig00021318.52

Cpa|evm.model.tig00021318.52 (tig00021318_g20172.t1)


Aliases : tig00021318_g20172.t1

Description : RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021318.52
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cz16g04140.t1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
PTI_05G01830.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Sro218_g090150.1 Contig1136.g10916 Ribosomal large subunit pseudouridine synthase 0.03 OrthoFinder
TP14G01690.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57923 57923 RNA-binding S4 domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_82236 82236 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01000227.1_cds_GFH09349.1_3826 HaLaN_04468, GFH09349 Ribosomal large subunit pseudouridine synthase D 0.02 OrthoFinder
lcl|BLLF01003665.1_cds_GFH27901.1_22378 HaLaN_26292, GFH27901 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493132.1_9433 KAA8493132 Putative RNA pseudouridine synthase 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 89 134
IPR006145 PsdUridine_synth_RsuA/RluA 163 340
No external refs found!