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  5. lcl|BLLF01000135.1_cds_GFH08072.1_2549

lcl|BLLF01000135.1_cds_GFH08072.1_2549 (HaLaN_02978, GFH08072)


Aliases : HaLaN_02978, GFH08072

Description : Cyclic nucleotide-binding domain-containing protein


Gene families : OG_01_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000135.1_cds_GFH08072.1_2549
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Cre02.g098750 30785469 No description available 0.02 OrthoFinder
Cre05.g243454 30783299 Potassium channel KOR2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
SymbC1.scaffold84.10 84.10 Cyclic nucleotide-binding domain; Ion transport domain... 0.01 OrthoFinder
lcl|BLLF01000349.1_cds_GFH10810.1_5287 HaLaN_06193, GFH10810 Cyclic nucleotide-binding domain-containing protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!