- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : HaLaN_02839, GFH07954
Description : Prolycopene isomerase, chloroplastic
Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|BLLF01000127.1_cds_GFH07954.1_2431 | |
| Cluster | HCCA: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001095.9 | tig00001095_g7025.t1 | Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
| Cpa|evm.model.tig00001258.10 | tig00001258_g7832.t1 | No description available | 0.03 | OrthoFinder | |
| Cpa|evm.model.tig00020723.8 | tig00020723_g13427.t1 | No description available | 0.01 | OrthoFinder | |
| Cre09.g407200 | 30780595 | Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum | 0.03 | OrthoFinder | |
| Cre16.g651923 | 30776797 | Secondary metabolism.terpenoids.terpenoid... | 0.03 | OrthoFinder | |
| Cz14g22040.t1 | No alias | Amine oxidase [Interproscan]. | 0.06 | OrthoFinder | |
| Dusal.0111s00019.1 | 33199801 | Amine oxidase [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0195s00005.1 | 33196565 | Amine oxidase [Interproscan]. | 0.01 | OrthoFinder | |
| PTI_01G08810.1 | No alias | NAD(P)-binding Rossmann-like domain [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_06G02910.1 | No alias | Amine oxidase [Interproscan]. | 0.01 | OrthoFinder | |
| Sro1228_g254380.1 | Contig2695.g21739 | Prolycopene isomerase, chloroplastic | 0.02 | OrthoFinder | |
| Sro1559_g282470.1 | Contig1268.g11842 | Prolycopene isomerase 2, chloroplastic | 0.02 | OrthoFinder | |
| Sro1649_g288630.1 | Contig3529.g27273 | Prolycopene isomerase, chloroplastic | 0.03 | OrthoFinder | |
| Sro774_g200580.1 | Contig845.g9302 | Prolycopene isomerase, chloroplastic | 0.01 | OrthoFinder | |
| TP03G05800.1 | No alias | Amine oxidase [Interproscan]. | 0.02 | OrthoFinder | |
| TP15G02230.1 | No alias | NAD(P)-binding Rossmann-like domain; Amine oxidase... | 0.01 | OrthoFinder | |
| Transcript_contig_2488 | 2488 | NAD(P)-binding Rossmann-like domain [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_78738 | 78738 | Hypothetical protein | 0.02 | OrthoFinder | |
| Vocar.0032s0058.1 | 32893700 | Amine oxidase [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002503327.1 | MICPUN_113305, 113305 | FAD dependent oxidoreductase | 0.01 | OrthoFinder | |
| XM_002506999.1 | MICPUN_92711, 92711 | Amine oxidase [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003054830.1 | MicpuC2_50019, 50019 | NAD(P)-binding Rossmann-like domain [Interproscan]. | 0.01 | OrthoFinder | |
| lcl|LHPG02000017.1_cds_PRW33144.1_3623 | PRW33144 | Carotene isomerase | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003333 | amino acid transmembrane transport | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0004329 | formate-tetrahydrofolate ligase activity | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006865 | amino acid transport | IEP | Enrichment |
| MF | GO:0008942 | nitrite reductase [NAD(P)H] activity | IEP | Enrichment |
| BP | GO:0015849 | organic acid transport | IEP | Enrichment |
| CC | GO:0016021 | integral component of membrane | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors | IEP | Enrichment |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Enrichment |
| MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | Enrichment |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Enrichment |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Enrichment |
| MF | GO:0032977 | membrane insertase activity | IEP | Enrichment |
| MF | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| MF | GO:0046857 | oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| MF | GO:0098809 | nitrite reductase activity | IEP | Enrichment |
| MF | GO:0140104 | molecular carrier activity | IEP | Enrichment |
| MF | GO:0140597 | protein carrier activity | IEP | Enrichment |
| BP | GO:1903825 | organic acid transmembrane transport | IEP | Enrichment |
| BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |