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  5. lcl|BLLF01000121.1_cds_GFH07863.1_2340

lcl|BLLF01000121.1_cds_GFH07863.1_2340 (HaLaN_02727, GFH07863)


Aliases : HaLaN_02727, GFH07863

Description : PDZ_3 domain-containing protein


Gene families : OG_01_0000337 (OrthoFinder) Phylogenetic Tree(s): OG0000337_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000121.1_cds_GFH07863.1_2340
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001065.24 tig00001065_g6725.t1 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cpa|evm.model.tig00020553.68 tig00020553_g10558.t1 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre01.g013300 30789429, DEG10 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Dusal.0226s00017.1 33193543 Trypsin-like peptidase domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_54404 54404 PDZ domain; Trypsin-like peptidase domain; Protease... 0.02 OrthoFinder
Vocar.0001s1712.1 32885374 Trypsin-like peptidase domain; Protease Do-like, PDZ... 0.02 OrthoFinder
XM_003055653.1 MicpuC2_1808, 1808 Trypsin-like peptidase domain; Protease Do-like, PDZ... 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44318.1_2382 PRW44318 Protease Do-like 9 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR041517 DEGP_PDZ 459 602
No external refs found!