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  5. lcl|BLLF01000115.1_cds_GFH07782.1_2259

lcl|BLLF01000115.1_cds_GFH07782.1_2259 (HaLaN_02635, GFH07782)


Aliases : HaLaN_02635, GFH07782

Description : DEAD box RNA helicase


Gene families : OG_01_0000110 (OrthoFinder) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000115.1_cds_GFH07782.1_2259
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Cre01.g021600 30789366 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g522850 30792053 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 OrthoFinder
Cre12.g539100 30792646 DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa... 0.02 OrthoFinder
Cre12.g540200 30792196 DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.04 OrthoFinder
Cz05g24090.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Cz07g14080.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Dusal.0077s00030.1 33192455 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0390s00008.1 33199535 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD25967 No alias Helicase, C-terminal; WW domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
EOD29280 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
EOD38751 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
OT_07G01830.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
OT_10G00150.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_12G00350.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain; WW... 0.02 OrthoFinder
OT_17G02300.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Sro1046_g235060.1 Contig1884.g16427 Dependent RNA helicase 0.04 OrthoFinder
Sro1103_g241740.1 Contig4430.g33251 Dependent RNA helicase 0.03 OrthoFinder
Sro2383_g325640.1 Contig4229.g32074 Dependent RNA helicase 0.01 OrthoFinder
Sro3572_g349270.1 Contig4413.g33150 RNA helicase DBP2 0.04 OrthoFinder
SymbC1.scaffold59.5 59.5 DEAD/DEAH box helicase domain; Nucleotide-sugar... 0.02 OrthoFinder
TP01G06480.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
TP03G06040.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Transcript_contig_56629 56629 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Vocar.0007s0049.1 32888024 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.03 OrthoFinder
XM_002499634.1 MICPUN_67469, 67469 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_002503331.1 MICPUN_75405, 75405 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_002504616.1 MICPUN_97883, 97883 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003063159.1 MicpuC2_45923, 45923 Dead-box ATP-dependent RNA helicase 0.01 OrthoFinder
XM_003063731.1 MicpuC2_22564, 22564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003064706.1 MicpuC2_45119, 45119 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59081.1_7009 PRW59081 DEAD-box ATP-dependent RNA helicase 20-like 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498053.1_7006 KAA8498053 DEAD-box ATP-dependent RNA helicase 5 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006098 pentose-phosphate shunt IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006740 NADPH regeneration IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051156 glucose 6-phosphate metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 275 372
IPR011545 DEAD/DEAH_box_helicase_dom 89 215
No external refs found!