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  5. lcl|BLLF01000100.1_cds_GFH07521.1_1998

lcl|BLLF01000100.1_cds_GFH07521.1_1998 (HaLaN_02334, GFH07521)


Aliases : HaLaN_02334, GFH07521

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000518 (OrthoFinder) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000100.1_cds_GFH07521.1_1998
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
TP02G08820.1 No alias RNA recognition motif domain; SAP domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57504 57504 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_003061299.1 MicpuC2_60999, 60999 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003062264.1 MicpuC2_48510, 48510 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33899.1_2989 PRW33899 F-box protein isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 249 318
IPR000504 RRM_dom 58 89
No external refs found!