Aliases : HaLaN_02328, GFH07516
Description : ABC transporter-like [Interproscan].
Gene families : OG_01_0000132 (OrthoFinder) Phylogenetic Tree(s): OG0000132_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: lcl|BLLF01000100.1_cds_GFH07516.1_1993 | |
Cluster | HCCA: Cluster_244 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000383.51 | tig00000383_g24665.t1 | ABC transporter F family member 1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00020629.98 | tig00020629_g12419.t1 | ABC transporter F family member 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
Cre01.g023787 | 30789637 | ABC transporter F family member 1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder | |
Cre01.g034950 | 30788752 | ABC transporter F family member 4 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cre11.g467781 | 30775790 | ABC transporter F family member 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cre11.g478128 | 30775784 | ABC transporter F family member 3 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cz03g13130.t1 | No alias | ABC-transporter extension domain; ABC transporter-like... | 0.03 | OrthoFinder | |
Cz05g08050.t1 | No alias | ABC-transporter extension domain; ABC transporter-like... | 0.02 | OrthoFinder | |
Cz07g32170.t1 | No alias | ABC-transporter extension domain; ABC transporter-like... | 0.03 | OrthoFinder | |
Dusal.0335s00016.1 | 33196473 | ABC transporter-like; ABC-transporter extension domain... | 0.02 | OrthoFinder | |
Dusal.1033s00003.1 | 33195065 | ABC transporter-like; ABC-transporter extension domain... | 0.02 | OrthoFinder | |
EOD04357 | No alias | ABC transporter protein [Ensembl]. | 0.02 | OrthoFinder | |
EOD21710 | No alias | W2 domain; ABC transporter-like; ABC-transporter... | 0.02 | OrthoFinder | |
OT_05G02420.1 | No alias | ABC-transporter extension domain; ABC transporter-like;... | 0.05 | OrthoFinder | |
Sro2585_g331900.1 | Contig1533.g13925 | Tylosin resistance ATP-binding protein TlrC | 0.03 | OrthoFinder | |
Sro365_g127370.1 | Contig3612.g27911 | Tylosin resistance ATP-binding protein TlrC | 0.02 | OrthoFinder | |
Sro419_g139050.1 | Contig4415.g33166 | Tylosin resistance ATP-binding protein TlrC | 0.01 | OrthoFinder | |
TP01G10170.1 | No alias | ABC transporter-like; ABC-transporter extension domain... | 0.02 | OrthoFinder | |
Transcript_contig_54041 | 54041 | ABC transporter-like [Interproscan]. | 0.03 | OrthoFinder | |
Vocar.0027s0024.1 | 32887256 | ABC-transporter extension domain; ABC transporter-like... | 0.02 | OrthoFinder | |
XM_002500098.1 | MICPUN_55988, 55988 | ATP-binding cassette superfamily | 0.02 | OrthoFinder | |
XM_002502487.1 | MICPUN_58625, 58625 | ABC-transporter extension domain; ZC3H15/TMA46 family,... | 0.02 | OrthoFinder | |
XM_003060298.1 | MicpuC2_60050, 60050 | ABC transporter | 0.02 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8498643.1_7596 | KAA8498643 | ABC transporter F family member 4 | 0.02 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8499275.1_8228 | KAA8499275 | ABC transporter F family member 2 | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
MF | GO:0016887 | ATPase | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000105 | histidine biosynthetic process | IEP | Enrichment |
MF | GO:0000287 | magnesium ion binding | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003677 | DNA binding | IEP | Enrichment |
MF | GO:0003697 | single-stranded DNA binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0003879 | ATP phosphoribosyltransferase activity | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006397 | mRNA processing | IEP | Enrichment |
BP | GO:0006413 | translational initiation | IEP | Enrichment |
BP | GO:0006547 | histidine metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0008033 | tRNA processing | IEP | Enrichment |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
BP | GO:0008150 | biological_process | IEP | Enrichment |
BP | GO:0008152 | metabolic process | IEP | Enrichment |
BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Enrichment |
BP | GO:0009116 | nucleoside metabolic process | IEP | Enrichment |
CC | GO:0009507 | chloroplast | IEP | Enrichment |
CC | GO:0009536 | plastid | IEP | Enrichment |
BP | GO:0009987 | cellular process | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016763 | pentosyltransferase activity | IEP | Enrichment |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Enrichment |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
MF | GO:0031369 | translation initiation factor binding | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003439 | ABC_transporter-like_ATP-bd | 91 | 260 |
No external refs found! |