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  5. Cpa|evm.model.tig00021312.46

Cpa|evm.model.tig00021312.46 (tig00021312_g20080.t1)


Aliases : tig00021312_g20080.t1

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B5 component


Gene families : OG_01_0004205 (OrthoFinder) Phylogenetic Tree(s): OG0004205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021312.46
Cluster HCCA: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
Cre14.g627900 30776652 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
PTI_03G05750.1 No alias Splicing factor 3B subunit 5/RDS3 complex subunit 10... 0.02 OrthoFinder
XM_002500967.1 MICPUN_79721, 79721 Splicing factor 3B subunit 5/RDS3 complex subunit 10... 0.02 OrthoFinder
XM_003056813.1 MicpuC2_14638, 14638 Splicing factor 3B subunit 5/RDS3 complex subunit 10... 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61510.1_169 PRW61510 Splicing factor 3B subunit 5 RDS3 complex subunit 10 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004857 enzyme inhibitor activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR009846 SF3b5/RDS3-10 5 82
No external refs found!