lcl|BLLF01000072.1_cds_GFH07062.1_1539 (HaLaN_01811, GFH07062)

Aliases : HaLaN_01811, GFH07062

Description : COP-II coat subunit

Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: lcl|BLLF01000072.1_cds_GFH07062.1_1539
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.3 tig00000829_g4645.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder
Sro1952_g307420.1 Contig4337.g32706 Transport protein SEC24 0.02 OrthoFinder
Sro196_g083380.1 Contig3206.g25334 Transport protein SEC24 0.02 OrthoFinder
Transcript_contig_54514 54514 Sec23/Sec24 beta-sandwich; Zinc finger,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018196 peptidyl-asparagine modification IEP Enrichment
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
InterPro domains Description Start Stop
IPR006900 Sec23/24_helical_dom 74 175
IPR012990 Sec23_24_beta_S 6 62
No external refs found!