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  5. lcl|BLLF01000050.1_cds_GFH06666.1_1143

lcl|BLLF01000050.1_cds_GFH06666.1_1143 (HaLaN_01335, GFH06666)


Aliases : HaLaN_01335, GFH06666

Description : DNA helicase


Gene families : OG_01_0002239 (OrthoFinder) Phylogenetic Tree(s): OG0002239_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000050.1_cds_GFH06666.1_1143
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.164 tig00000144_g9157.t1 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder
Cre07.g316850 30774860, MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder
Cz01g46020.t1 No alias MCM, AAA-lid domain; MCM domain [Interproscan]. 0.03 OrthoFinder
Cz01g46030.t1 No alias MCM N-terminal domain; MCM OB domain; MCM domain [Interproscan]. 0.03 OrthoFinder
Dusal.0005s00042.1 33196920 MCM N-terminal domain; MCM domain; MCM OB domain; MCM,... 0.02 OrthoFinder
EOD16047 No alias MCM, AAA-lid domain; MCM domain [Interproscan]. 0.03 OrthoFinder
EOD37691 No alias MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan]. 0.04 OrthoFinder
OT_14G01130.1 No alias MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.02 OrthoFinder
Sro408_g136940.1 Contig3193.g25229 Licensing factor MCM4 0.01 OrthoFinder
Transcript_contig_53744 53744 MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan]. 0.03 OrthoFinder
Vocar.0003s0114.1 32889118 MCM, AAA-lid domain; MCM N-terminal domain; MCM OB... 0.04 OrthoFinder
XM_002505503.1 MICPUN_95766, 95766 MCM domain; MCM, AAA-lid domain; MCM OB domain; MCM... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59221.1_7052 PRW59221 DNA replication licensing factor MCM4 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492449.1_9142 KAA8492449 DNA replication licensing factor mcm4-B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR033762 MCM_OB 42 167
IPR001208 MCM_dom 277 497
IPR041562 MCM_lid 518 555
No external refs found!