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  5. Cpa|evm.model.tig00021293.6

Cpa|evm.model.tig00021293.6 (tig00021293_g20000.t1)


Aliases : tig00021293_g20000.t1

Description : DNA repair protein RAD5A OS=Arabidopsis thaliana


Gene families : OG_01_0000210 (OrthoFinder) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021293.6
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
EOD32507 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.01 OrthoFinder
Sro742_g195820.1 Contig1214.g11398 Regulator of chromatin subfamily A member 3-like 1 0.01 OrthoFinder
Sro868_g213300.1 Contig2961.g23532 Regulator of chromatin subfamily A member 3-like 1 0.01 OrthoFinder
XM_002499345.1 MICPUN_99199, 99199 SNF2 super family 0.03 OrthoFinder
lcl|BLLF01001332.1_cds_GFH18643.1_13120 HaLaN_15482, GFH18643 Helicase ATP-binding domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 1 425
IPR001650 Helicase_C 581 692
No external refs found!