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  5. Cpa|evm.model.tig00021293.23

Cpa|evm.model.tig00021293.23 (tig00021293_g20014.t1)


Aliases : tig00021293_g20014.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.SWA2/NOC1 assembly factor


Gene families : OG_01_0002091 (OrthoFinder) Phylogenetic Tree(s): OG0002091_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021293.23
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre10.g459600 30790609 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cz08g12220.t1 No alias Hypothetical protein 0.07 OrthoFinder
Cz08g12230.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz08g12240.t1 No alias CCAAT-binding factor [Interproscan]. 0.07 OrthoFinder
Dusal.0293s00003.1 33190184 CCAAT-binding factor [Interproscan]. 0.02 OrthoFinder
EOD11177 No alias CCAAT-binding factor [Interproscan]. 0.06 OrthoFinder
EOD19601 No alias CCAAT-binding factor [Interproscan]. 0.06 OrthoFinder
OT_14G00120.1 No alias CCAAT-binding factor [Interproscan]. 0.04 OrthoFinder
PTI_33G00080.1 No alias CCAAT-binding factor [Interproscan]. 0.05 OrthoFinder
Sro381_g130900.1 Contig161.g1823 CCAAT/enhancer-binding protein zeta 0.05 OrthoFinder
TP01G09110.1 No alias CCAAT-binding factor [Interproscan]. 0.01 OrthoFinder
Transcript_contig_78321 78321 CCAAT-binding factor [Interproscan]. 0.04 OrthoFinder
Vocar.0020s0188.1 32886771 CCAAT-binding factor [Interproscan]. 0.02 OrthoFinder
XM_003063700.1 MicpuC2_49035, 49035 CCAAT-binding factor [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000229.1_cds_GFH09368.1_3845 HaLaN_04490, GFH09368 CBF domain-containing protein 0.09 OrthoFinder
lcl|BLLF01000932.1_cds_GFH16006.1_10483 HaLaN_12349, GFH16006 CBF domain-containing protein 0.05 OrthoFinder
lcl|BLLF01002098.1_cds_GFH22680.1_17157 HaLaN_20185, GFH22680 CBF domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32482.1_3998 PRW32482 CCAAT enhancer-binding zeta 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 151 293
No external refs found!