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  5. lcl|BLLF01000028.1_cds_GFH06227.1_704

lcl|BLLF01000028.1_cds_GFH06227.1_704 (HaLaN_00823, GFH06227)


Aliases : HaLaN_00823, GFH06227

Description : RNA helicase


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000028.1_cds_GFH06227.1_704
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.11 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 OrthoFinder
Cpa|evm.model.tig00000615.43 tig00000615_g2571.t1 DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre03.g188550 30787162 DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.02 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.02 OrthoFinder
Cz04g34220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.06 OrthoFinder
EOD29706 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
OT_08G01350.1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
PTI_09G03560.1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
PTI_14G03510.1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
Sro1516_g279100.1 Contig3898.g29880 RNA helicase HAS1 0.03 OrthoFinder
Sro625_g177670.1 Contig691.g8105 RNA helicase DBP4 0.04 OrthoFinder
Sro967_g225820.1 Contig1083.g10521 Dependent RNA helicase 0.01 OrthoFinder
TP03G01160.1 No alias Domain of unknown function DUF4217; Helicase,... 0.04 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.02 OrthoFinder
Transcript_contig_2473 2473 Helicase, C-terminal; Domain of unknown function DUF4217... 0.03 OrthoFinder
XM_002503194.1 MICPUN_82943, 82943 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.03 OrthoFinder
XM_002505580.1 MICPUN_87736, 87736 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.03 OrthoFinder
XM_002508993.1 MICPUN_66348, 66348 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.05 OrthoFinder
XM_003063698.1 MicpuC2_22865, 22865 Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59153.1_7055 PRW59153 ATP-dependent RNA helicase HAS1 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33079.1_3833 PRW33079 DEAD-box ATP-dependent RNA helicase 32 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004834 tryptophan synthase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 28 175
No external refs found!