Aliases : HaLaN_00716, GFH06137
Description : TRNA pseudouridine synthase D
Gene families : OG_01_0001257 (OrthoFinder) Phylogenetic Tree(s): OG0001257_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: lcl|BLLF01000024.1_cds_GFH06137.1_614 | |
Cluster | HCCA: Cluster_280 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cz10g14080.t1 | No alias | Hypothetical protein | 0.02 | OrthoFinder | |
EOD17688 | No alias | Pseudouridine synthase, TruD [Interproscan]. | 0.03 | OrthoFinder | |
Transcript_contig_61974 | 61974 | Pseudouridine synthase, TruD [Interproscan]. | 0.01 | OrthoFinder | |
XM_002500999.1 | MICPUN_66033, 66033 | Pseudouridine synthase, TruD [Interproscan]. | 0.03 | OrthoFinder | |
lcl|LHPG02000012.1_cds_PRW45063.1_1659 | PRW45063 | Multisubstrate pseudouridine synthase 7-like | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0004819 | glutamine-tRNA ligase activity | IEP | Enrichment |
CC | GO:0005737 | cytoplasm | IEP | Enrichment |
CC | GO:0005963 | magnesium-dependent protein serine/threonine phosphatase complex | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006425 | glutaminyl-tRNA aminoacylation | IEP | Enrichment |
CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Enrichment |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Enrichment |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
MF | GO:0019888 | protein phosphatase regulator activity | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0051287 | NAD binding | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
CC | GO:0140535 | intracellular protein-containing complex | IEP | Enrichment |
CC | GO:1903293 | phosphatase complex | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001656 | PsdUridine_synth_TruD | 154 | 238 |
No external refs found! |