lcl|BLLF01000024.1_cds_GFH06137.1_614 (HaLaN_00716, GFH06137)


Aliases : HaLaN_00716, GFH06137

Description : TRNA pseudouridine synthase D


Gene families : OG_01_0001257 (OrthoFinder) Phylogenetic Tree(s): OG0001257_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000024.1_cds_GFH06137.1_614
Cluster HCCA: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
Cz10g14080.t1 No alias Hypothetical protein 0.02 OrthoFinder
EOD17688 No alias Pseudouridine synthase, TruD [Interproscan]. 0.03 OrthoFinder
Transcript_contig_61974 61974 Pseudouridine synthase, TruD [Interproscan]. 0.01 OrthoFinder
XM_002500999.1 MICPUN_66033, 66033 Pseudouridine synthase, TruD [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45063.1_1659 PRW45063 Multisubstrate pseudouridine synthase 7-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004819 glutamine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001656 PsdUridine_synth_TruD 154 238
No external refs found!