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  5. lcl|BLLF01000010.1_cds_GFH05838.1_315

lcl|BLLF01000010.1_cds_GFH05838.1_315 (HaLaN_00368, GFH05838)


Aliases : HaLaN_00368, GFH05838

Description : Ribosomal protein S19e [Interproscan].


Gene families : OG_01_0003297 (OrthoFinder) Phylogenetic Tree(s): OG0003297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01000010.1_cds_GFH05838.1_315
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021017.6 tig00021017_g17179.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cre02.g106600 30784812, RPS19 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder
Cz11g12080.t1 No alias Ribosomal protein S19e [Interproscan]. 0.04 OrthoFinder
Dusal.1308s00001.1 33194138 Ribosomal protein S19e [Interproscan]. 0.04 OrthoFinder
EOD40848 No alias Ribosomal protein S19e [Interproscan]. 0.07 OrthoFinder
OT_11G02460.1 No alias Ribosomal protein S19e [Interproscan]. 0.08 OrthoFinder
PTI_13G03570.1 No alias Ribosomal protein S19e [Interproscan]. 0.1 OrthoFinder
Sro345_g122470.1 Contig2266.g18806 40S ribosomal protein S19 0.14 OrthoFinder
SymbC1.scaffold2373.2 2373.2 Ribosomal protein S19e [Interproscan]. 0.03 OrthoFinder
TP05G07890.1 No alias Ribosomal protein S19e [Interproscan]. 0.12 OrthoFinder
XM_002509176.1 MICPUN_107171, 107171 Ribosomal protein S19e [Interproscan]. 0.11 OrthoFinder
XM_003061489.1 MicpuC2_49693, 49693 Ribosomal protein S19e [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59438.1_7304 PRW59438 40S ribosomal S19-1 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494467.1_2997 KAA8494467 40S ribosomal protein S19-1 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 9 144
No external refs found!