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Aliases : tig00021275_g19885.t1
Description : Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00021275.25 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz07g13180.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| Cz19g07040.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.03 | OrthoFinder | |
| Dusal.0024s00040.1 | 33202173 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD31071 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| EOD36957 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| OT_05G01620.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| PTI_02G06230.1 | No alias | Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... | 0.01 | OrthoFinder | |
| PTI_04G04910.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| Sro860_g212120.1 | Contig2239.g18594 | ISWI chromatin-remodeling complex ATPase ISW2 | 0.02 | OrthoFinder | |
| SymbC1.scaffold1732.5 | 1732.5 | SNF2-related, N-terminal domain; Helicase, C-terminal... | 0.01 | OrthoFinder | |
| Transcript_contig_67487 | 67487 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| Vocar.0004s0442.1 | 32889776 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| Vocar.0019s0100.1 | 32892722 | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.02 | OrthoFinder | |
| XM_002499830.1 | MICPUN_56506, 56506 | SNF2 super family | 0.02 | OrthoFinder | |
| XM_002502289.1 | MICPUN_58978, 58978 | SNF2 super family | 0.02 | OrthoFinder | |
| lcl|BLLF01000629.1_cds_GFH13581.1_8058 | HaLaN_09499, GFH13581 | SNF2-related, N-terminal domain [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|LHPG02000001.1_cds_PRW61596.1_539 | PRW61596 | CHD3-type chromatin-remodeling factor PICKLE | 0.02 | OrthoFinder | |
| lcl|LHPG02000008.1_cds_PRW56604.1_9911 | PRW56604 | CHROMATIN REMODELING 19 | 0.02 | OrthoFinder | |
| lcl|LHPG02000008.1_cds_PRW56740.1_9705 | PRW56740 | Chromatin-remodeling complex ATPase chain | 0.01 | OrthoFinder | |
| lcl|LHPG02000021.1_cds_PRW20842.1_5116 | PRW20842 | ATP-dependent DNA helicase DDM1 isoform X1 | 0.01 | OrthoFinder | |
| lcl|VRMN01000004.1_cds_KAA8494382.1_2912 | KAA8494382 | ISWI chromatin-remodeling complex ATPase CHR17 | 0.03 | OrthoFinder | |
| lcl|VRMN01000008.1_cds_KAA8492942.1_2678 | KAA8492942 | TATA-binding protein-associated factor | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0004540 | ribonuclease activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
| BP | GO:0006694 | steroid biosynthetic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0008202 | steroid metabolic process | IEP | Enrichment |
| MF | GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | IEP | Enrichment |
| BP | GO:0009314 | response to radiation | IEP | Enrichment |
| BP | GO:0009416 | response to light stimulus | IEP | Enrichment |
| BP | GO:0009581 | detection of external stimulus | IEP | Enrichment |
| BP | GO:0009582 | detection of abiotic stimulus | IEP | Enrichment |
| BP | GO:0009583 | detection of light stimulus | IEP | Enrichment |
| BP | GO:0009584 | detection of visible light | IEP | Enrichment |
| BP | GO:0009605 | response to external stimulus | IEP | Enrichment |
| BP | GO:0009628 | response to abiotic stimulus | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| BP | GO:0016125 | sterol metabolic process | IEP | Enrichment |
| BP | GO:0016126 | sterol biosynthetic process | IEP | Enrichment |
| MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Enrichment |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Enrichment |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Enrichment |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
| BP | GO:0018298 | protein-chromophore linkage | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0036211 | protein modification process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0051606 | detection of stimulus | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| MF | GO:0061783 | peptidoglycan muralytic activity | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Enrichment |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |